Remove useless TODOs
This commit is contained in:
parent
6c5b69a23d
commit
9853469f3c
@ -1,7 +1,7 @@
|
|||||||
"""
|
"""
|
||||||
This file contains functions to deal with Bibtex files and edit them.
|
This file contains functions to deal with Bibtex files and edit them.
|
||||||
|
|
||||||
TODO: Unittests
|
TODO: Unittests + use bibtexparser writer
|
||||||
"""
|
"""
|
||||||
import bibtexparser
|
import bibtexparser
|
||||||
import re
|
import re
|
||||||
@ -111,7 +111,10 @@ def delete(filename, identifier):
|
|||||||
bibtex = bibtex.entries_dict
|
bibtex = bibtex.entries_dict
|
||||||
|
|
||||||
# Delete the bibtex entry
|
# Delete the bibtex entry
|
||||||
|
try:
|
||||||
del(bibtex[identifier])
|
del(bibtex[identifier])
|
||||||
|
except KeyError:
|
||||||
|
pass
|
||||||
|
|
||||||
# Write the resulting BibTeX
|
# Write the resulting BibTeX
|
||||||
write(filename, bibtex)
|
write(filename, bibtex)
|
||||||
@ -140,6 +143,41 @@ def get(filename, ignore_fields=[]):
|
|||||||
return bibtex
|
return bibtex
|
||||||
|
|
||||||
|
|
||||||
|
def get_entry_by_filter(filename, filter, ignore_fields=[]):
|
||||||
|
"""
|
||||||
|
Get an entry from a BibTeX file.
|
||||||
|
|
||||||
|
:param filename: The name of the BibTeX file.
|
||||||
|
:param filter: A function returning ``True`` or ``False`` whether the \
|
||||||
|
entry should be included or not.
|
||||||
|
:param ignore_fields: An optional list of fields to strip from the BibTeX \
|
||||||
|
file.
|
||||||
|
|
||||||
|
:returns: A ``bibtexparser.BibDatabase`` object representing the \
|
||||||
|
first matching entry. ``None`` if entry was not found.
|
||||||
|
"""
|
||||||
|
# Open bibtex file
|
||||||
|
with open(filename, 'r', encoding="utf-8") as fh:
|
||||||
|
bibtex = bibtexparser.load(fh)
|
||||||
|
bibtex = bibtex.entries
|
||||||
|
|
||||||
|
matching_entry = None
|
||||||
|
try:
|
||||||
|
# Try to fetch the matching entry dict
|
||||||
|
for entry in bibtex.items:
|
||||||
|
if filter(entry):
|
||||||
|
matching_entry = entry
|
||||||
|
except KeyError:
|
||||||
|
# If none found, return None
|
||||||
|
return None
|
||||||
|
|
||||||
|
# Clean the entry dict if necessary
|
||||||
|
matching_entry = {k: matching_entry[k]
|
||||||
|
for k in matching_entry if k not in ignore_fields}
|
||||||
|
|
||||||
|
return matching_entry
|
||||||
|
|
||||||
|
|
||||||
def get_entry(filename, identifier, ignore_fields=[]):
|
def get_entry(filename, identifier, ignore_fields=[]):
|
||||||
"""
|
"""
|
||||||
Get an entry from a BibTeX file.
|
Get an entry from a BibTeX file.
|
||||||
@ -149,31 +187,31 @@ def get_entry(filename, identifier, ignore_fields=[]):
|
|||||||
:param ignore_fields: An optional list of fields to strip from the BibTeX \
|
:param ignore_fields: An optional list of fields to strip from the BibTeX \
|
||||||
file.
|
file.
|
||||||
|
|
||||||
:returns: A ``bibtexparser`` dict representing the fetched entry. \
|
:returns: A ``bibtexparser.BibDatabase`` object representing the \
|
||||||
``None`` if entry was not found.
|
fetched entry. ``None`` if entry was not found.
|
||||||
"""
|
"""
|
||||||
# Open bibtex file
|
return get_entry_by_filter(filename,
|
||||||
with open(filename, 'r', encoding="utf-8") as fh:
|
lambda x: x["ID"] == identifier,
|
||||||
bibtex = bibtexparser.load(fh)
|
ignore_fields)
|
||||||
bibtex = bibtex.entries_dict
|
|
||||||
|
|
||||||
try:
|
|
||||||
# Try to fetch the matching entry dict
|
|
||||||
entry = bibtex[identifier]
|
|
||||||
except KeyError:
|
|
||||||
# If none found, return None
|
|
||||||
return None
|
|
||||||
|
|
||||||
# Clean the entry dict if necessary
|
|
||||||
entry = {k: entry[k] for k in entry if k not in ignore_fields}
|
|
||||||
|
|
||||||
return entry
|
|
||||||
|
|
||||||
|
|
||||||
def to_filename(bibtex, mask=default_papers_filename_mask):
|
def to_filename(bibtex, mask=default_papers_filename_mask):
|
||||||
"""
|
"""
|
||||||
Convert a bibtex entry to a formatted filename according to a given mask.
|
Convert a bibtex entry to a formatted filename according to a given mask.
|
||||||
|
|
||||||
|
.. note ::
|
||||||
|
|
||||||
|
Available masks out of the box are:
|
||||||
|
- ``journal``
|
||||||
|
- ``title``
|
||||||
|
- ``year``
|
||||||
|
- ``first`` for the first author
|
||||||
|
- ``last`` for the last author
|
||||||
|
- ``authors`` for the list of authors
|
||||||
|
- ``arxiv_version`` (discarded if no arXiv version in the BibTeX)
|
||||||
|
|
||||||
|
Filename is slugified after applying the masks.
|
||||||
|
|
||||||
:param bibtex: A dict representing a BibTeX entry, as the one from \
|
:param bibtex: A dict representing a BibTeX entry, as the one from \
|
||||||
``bibtexparser`` output.
|
``bibtexparser`` output.
|
||||||
:param mask: A Python format string.
|
:param mask: A Python format string.
|
||||||
|
@ -1,8 +1,6 @@
|
|||||||
"""
|
"""
|
||||||
This files contains all the functions to extract DOIs of citations from .bbl
|
This files contains all the functions to extract DOIs of citations from .bbl
|
||||||
files.
|
files.
|
||||||
|
|
||||||
# TODO: Unittests
|
|
||||||
"""
|
"""
|
||||||
import os
|
import os
|
||||||
import re
|
import re
|
||||||
|
@ -1,8 +1,6 @@
|
|||||||
"""
|
"""
|
||||||
This files contains all the functions to extract DOIs of citations from
|
This files contains all the functions to extract DOIs of citations from
|
||||||
BibTeX files.
|
BibTeX files.
|
||||||
|
|
||||||
# TODO: Unittests
|
|
||||||
"""
|
"""
|
||||||
import bibtexparser
|
import bibtexparser
|
||||||
import os
|
import os
|
||||||
|
@ -1,8 +1,6 @@
|
|||||||
"""
|
"""
|
||||||
This files contains all the functions to extract DOIs of citations from
|
This files contains all the functions to extract DOIs of citations from
|
||||||
PDF files.
|
PDF files.
|
||||||
|
|
||||||
# TODO: Unittests
|
|
||||||
"""
|
"""
|
||||||
import os
|
import os
|
||||||
import requests
|
import requests
|
||||||
|
@ -1,8 +1,6 @@
|
|||||||
"""
|
"""
|
||||||
This files contains all the functions to extract DOIs of citations from
|
This files contains all the functions to extract DOIs of citations from
|
||||||
plaintext files.
|
plaintext files.
|
||||||
|
|
||||||
# TODO: Unittests
|
|
||||||
"""
|
"""
|
||||||
import os
|
import os
|
||||||
import requests
|
import requests
|
||||||
|
@ -443,8 +443,6 @@ def get_sources(arxiv_id):
|
|||||||
canonical form.
|
canonical form.
|
||||||
:returns: A ``TarFile`` object of the sources of the arXiv preprint or \
|
:returns: A ``TarFile`` object of the sources of the arXiv preprint or \
|
||||||
``None``.
|
``None``.
|
||||||
|
|
||||||
# TODO: Unittests
|
|
||||||
"""
|
"""
|
||||||
try:
|
try:
|
||||||
r = requests.get(ARXIV_EPRINT_URL.format(arxiv_id=arxiv_id))
|
r = requests.get(ARXIV_EPRINT_URL.format(arxiv_id=arxiv_id))
|
||||||
@ -468,8 +466,6 @@ def get_bbl(arxiv_id):
|
|||||||
a canonical form.
|
a canonical form.
|
||||||
:returns: A list of the full text of the ``.bbl`` files (if any) \
|
:returns: A list of the full text of the ``.bbl`` files (if any) \
|
||||||
or ``None``.
|
or ``None``.
|
||||||
|
|
||||||
# TODO: Unittests
|
|
||||||
"""
|
"""
|
||||||
tf = get_sources(arxiv_id)
|
tf = get_sources(arxiv_id)
|
||||||
bbl_files = [i for i in tf.getmembers() if i.name.endswith(".bbl")]
|
bbl_files = [i for i in tf.getmembers() if i.name.endswith(".bbl")]
|
||||||
@ -490,9 +486,6 @@ def get_citations(arxiv_id):
|
|||||||
:param arxiv_id: The arXiv id (e.g. ``1401.2910`` or ``1401.2910v1``) in \
|
:param arxiv_id: The arXiv id (e.g. ``1401.2910`` or ``1401.2910v1``) in \
|
||||||
a canonical form.
|
a canonical form.
|
||||||
:returns: A dict of cleaned plaintext citations and their associated DOI.
|
:returns: A dict of cleaned plaintext citations and their associated DOI.
|
||||||
|
|
||||||
>>> get_citations("1401.2910")
|
|
||||||
# TODO: Unittests
|
|
||||||
"""
|
"""
|
||||||
dois = {}
|
dois = {}
|
||||||
# Get the list of bbl files for this preprint
|
# Get the list of bbl files for this preprint
|
||||||
|
Loading…
Reference in New Issue
Block a user